Papers in refereed journals (*Students in Filgueira’s lab)
  1. Falconer L, Rector M, Yakubu S O, Filgueira R, Iversen A, Mikkelsen A, Sprague M, Ytteborg E. Maladaptation to climate change poses a threat to future aquaculture production. Reviews in Aquaculture.
  2. Filgueira R, Agüera A, Skogen MD, Strand Ø, Strohmeier T. Comparative analysis of fjord- and farm-scale models in bivalve aquaculture: implications of spatial and temporal resolution. Aquaculture Environment Interactions.
  3. Saunders D, Kelly NE, Filgueira R, Allen S, Merchrod EF, Maselli V, Singh N, Walker TR. Spatial comparison and characterization of microplastic contamination in Blue mussels (Mytilus edulis) and Eastern oysters (Crassostrea virginica) from Nova Scotia, ​​Canada. Water, Air, & Soil Pollution.
  4. Hatakeyama Y, Maruo C, Fujibayashi M, Filgueira R, Sakamaki T. On-site biofouling removal enhances the nutritional and gustatory value of oysters from non-fed aquaculture and the recovery of essential biomolecules for human consumption. Aquaculture Reports.
  5. Winterburn K*, Talevi K*, Clarke SB*, Clements JC, Coffin MRS, Filgueira R. Metabolic depression explains differences in vulnerability to low oxygen between two species of temperate marine bivalves. Marine Environmental Research.
  6. Clarke SB*, Ignatz EH*, Hori TS, Comeau LA, Filgueira R. Turning up the heat: Differential responses of blue mussels (Mytilus edulis) in Atlantic Canada to thermal stress. Marine Environmental Research.
  7. Krause G, Filgueira R, Ahmed N, Alexander K, Fanning L, Ferse S, Guchs N, Guillen J, Johnson T, Kaiser M, Kite-Powell H, Kreiss C, Lipton D, Marin S, Mikkelsen E, van den Burg S, Stead S, Villasante S. Regionalisation alone will not make marine aquaculture more sustainable. Reviews in Aquaculture.
  8. Koch SJI, Filgueira R, Alberg J, Angel DL, Byron CJ, Cerca M, Ennis LB, Bak UG, Kane F, Kotta J, Kraan S, Peck M, Poelman M, Slegers PM, Spilling K, Thomas J-B E, Kluger LC (2025) Identifying an optimal operating window for seaweed aquaculture: balancing expansion barriers and carrying capacity. Aquaculture.
  9. Pérez Agúndez JA, Filgueira R, Ahmed N, Asif F, Billing S.L., Fanning L, Himes-Cornell A, Johnson TR, Krause G, Kreiss CM, Mikkelsen E, Stead SM, van den Burg S, Vecchio Y, Villasante S (2025) Strengthening policy action to tackle social acceptability issues in European aquaculture. ICES Journal of Marine Sciences. ***Editor’s Choice***
  10. Sun X, Filgueira R, Sun Y, Han M, Tang Q, Sun Y (2025) Oyster-driven carbon storage in sediment: insights from a half-century farming record. Communication Earth and Environment.
  11. Sun X, Filgueira R, Sun Y, Jiang Z, Zhao X, Zhao Q, Li P, Wang L, Sun Y, Tang Q (2025) The burial characteristics of organic carbon along the vicissitude of coastal oyster farming. ICES Journal of Marine Science.
  12. Sakamaki T, Hatakeyama Y, Maruo C, Fujibayashi M, Filgueira R (2025) Benefits from removing fouling mussels in suspension oyster aquaculture: an evaluation using farm-scale carbon budget and bivalve growth models. Aquaculture 605:742531 https://doi.org/10.1016/j.aquaculture.2025.742531
  13. Steeves L*, Winterburn K*, Coffin MRS, Babarro JMF, Guyondet T, Comeau LA, Filgueira R (2025) The combined effects of temperature and exogenous bacterial sources on mortality in Crassostrea virginica under severe hypoxia. Marine Biology 172:57 https://doi.org/10.1007/s00227-025-04617-4
  14. Kabanova E*, Filgueira R (2025) Effects of temperature and food availability on feeding behaviour and metabolism in the sea cucumber Cucumaria frondosa. Marine Biology 172:44 https://doi.org/10.1007/s00227-025-04603-w 
  15. Cordero RD*, Lacoursière-Roussel A, Filgueira R, Arseneau J, Barrell J, Barrett TJ, McKindsey CW, Gallardi D, Gibb O, Sutherland T, Guyondet T 92025) Comparative analysis of mesozooplankton size fraction structure in bivalve aquaculture embayments in Atlantic and Pacific Canadian coastal regions. Environmental and Sustainability Indicators 25:100562 https://doi.org/10.1016/j.indic.2024.100562
  16. Lavaud R, Marn N, Domingos T, Filgueira R, Lika K, Rakel K, Klanjšček T (2025) Metabolic organization across scales of space and time. Ecological Modelling 500:110951 https://doi.org/10.1016/j.ecolmodel.2024.110951
  17. Rector ME*, Filgueira R (2025) Different coasts for different folks: Place-based community values and experience mediate social acceptability of low-trophic aquaculture. Marine Policy 171: 106445 https://doi.org/10.1016/j.marpol.2024.106445
  18. Cunningham J*, Lämmle A*, Sakamaki T, Filgueira R (2025) Predicting Eastern Oyster (Crassostrea virginica) settlement using Growing Degree Days along the North Shore of Nova Scotia, Canada. Aquaculture 594:741377https://doi.org/10.1016/j.aquaculture.2024.741377
  19. Korus J*, Filgueira R, Grant J (2024) Effect of aquaculture operations on the physiology and behaviour of Atlantic salmon (Salmo salar) during two heat events on a commercial farm. Frontiers in Aquaculture 3:1428684. https://doi.org/10.3389/faquc.2024.1428684
  20. Krause G, Weitzman J, Rector ME, Filgueira R, van den Burg S, Dankel DJ, Olsen MS, Osmundsen TC (2024) The Social Science of Offshore Aquaculture: Uncertainties, challenges and solution-oriented governance needs. Frontiers in Aquaculture 3:1384037 https://doi.org/10.3389/faquc.2024.1384037
  21. Stockwell C*, Filgueira R, Grant J (2024) The effects of oxygen supplementation on farmed Atlantic salmon (Salmo salar) behavior using acoustic telemetry. Aquaculture Research 6972744 https://doi.org/10.1155/2024/6972744
  22. Cerqueira V, Pimentel J, Korus J*, Bravo F, Amorim J, Oliveira M, Swanson A, Filgueira R, Grant J, Torgo L (2024). Forecasting ocean hypoxia in salmonid fish farms. Frontiers in Aquaculture 3: 1365123.https://doi.org/10.3389/faquc.2024.1365123
  23. Byron CJ, Koch S, Callier MD, Kluger L, Angel D, Vanaverbeke J, Filgueira R (2024) Indicators for Ecological Carrying Capacity of Bivalve and Seaweed Aquaculture. Reviews in Aquaculture 12945 https://doi.org/10.1111/raq.12945
  24. Kosicheck H*, Reimer J, Filgueira R (2024). Assessing the potential for seaweed aquaculture in Nova Scotia. Aquaculture Reports 36: 102064. https://doi.org/10.1016/j.aqrep.2024.102064
  25. Korus J*, Filgueira R, Grant J (2024) Influence of temperature on the behaviour and physiology of Atlantic salmon (Salmo salar) on a commercial farm. Aquaculture 589:740978. https://doi.org/10.1016/j.aquaculture.2024.740978
  26. Sajid Z, Gamperl K, Parrish CC, Colombo S, Santander J, Mather C, Neis B, Holmen IM, Filgueira R, McKenzie CH, Souto-Cavalli L, Jeebhay M, Gao W, López-Gómez MA, Ochs C, Lehnert S, Couturier C, Knott C, Romero JF, Caballero-Solares A, Cembella A, Murray HM, Fleming I, Finnis J, Fast MD, Wells M, Singh G (2024) An Aquaculture Risk Model to Understand the Causes and Consequences of Salmon Mass Mortality Events (MMEs). Reviews in Aquaculture https://doi.org/10.1111/raq.12917
  27. Cogger A*, Filgueira R, Keenan E (2024) A feasibility study for the application of climate change vulnerability assessments on species in the Tallurutiup Imanga National Marine Conservation Area. Aquatic Conservation: Marine and Freshwater Ecosystems, https://doi.org/10.1002/aqc.4112
  28. Krassovski MV, Foreman MGG, Guyondet T, Filgueira R, Sutherland TF (2024) A circulation model for Baynes Sound, British Columbia, Canada. Atmosphere-Ocean 62:1, 90-118, DOI: 10.1080/07055900.2023.2287454
  29. Rector ME*, Filgueira R, Grant J. The role of salmon aquaculture eco-certification in corporate social responsibility and the delivery of ecosystem services and disservices. Marine Policy 160: 105948 DOI: 10.1016/j.marpol.2023.105948
  30. Chary K, van Riel A-J, Muscat A, Wilfart A, Harchaoui S, Verdegem M, Filgueira R, Troell M, Henriksson PJG, de Boer IJM, Wiegertjes GF (2023) Transforming sustainable aquaculture by applying circularity principles. Reviews in Aquaculture doi.org/10.1111/raq.12860
  31. Zavell MD, Lindahl O, Filgueira R, Shumway SE (2023) An estimate of carbon storage capabilities from wild and cultured shellfish in the Northwest Atlantic and their potential inclusion in a carbon economy. Journal of Shellfish Research 42(2):325-342 doi.org/10.2983/035.042.0214
  32. Comeau LA, Guyondet T, Drolet D, Sonier R, Clements JC, Tremblay R, Filgueira R (2023) Revisiting ecological carrying capacity indices for bivalve culture. Aquaculture 577:739911  doi.org/10.1016/j.aquaculture.2023.739911
  33. Sun X, Filgueira R, Wang N, Han M, Guyondet T, Zhang X (2023) Vacuum effect: a distribution process of organic carbon mediated by bivalve farming. Environmental Science & Technology Water doi.org/10.1021/acsestwater.3c00143
  34. Talevi J*, Steeves L*, Coffin M, Guyondet T, Sakamaki T, Comeau LA, Filgueira R (2023) The physiological response of four commercially important bivalve species to a naturally occurring heatwave. Canadian Journal of Zoology doi.org/10.1139/cjz-2022-0215
  35. Rector ME*, Filgueira R, Grant J (2023) From farm sustainability to ecosystem sustainability: Exploring the limitations of farm-applied aquaculture eco-certification schemes. Journal of Environmental Management 339:117869 doi.org/10.1016/j.jenvman.2023.117869
  36. Rector ME*, Filgueira R, Grant J (2023) Does eco-certification change public opinion of salmon aquaculture in Canada? A comparison of communities with and without salmon farms. Aquaculture Economics & Managementdoi.org/10.1080/13657305.2023.2196948
  37. Weitzman J*, Filgueira R, Grant J (2023) Dimensions of legitimacy and trust in shaping social acceptance of marine aquaculture: an in-depth case study in Nova Scotia, Canada. Environmental Science and Policy 143:1-13 doi.org/10.1016/j.envsci.2023.02.019
  38. Fisher J, Angel D, Callier M, Cheney D, Filgueira R, Hudson B, McKindsey CW, Milke L, Moore H, O’Beirn F, O’Caroll J, Rabe B, Telfer T, Byron C (2023) Ecological carrying capacity in mariculture: consideration and application in geographic strategies and policy. Marine Policy 150:105516 doi.org/10.1016/j.marpol.2023.105516
  39. Albentosa A, Makanjoula A, Vera M, Ibarrola I, Filgueira R, Galimany E, da Costa F, Pardo B, Vázquez-Luis M, Hernández A, Hernandis S, Martínez P (2023) Recovery of eutrophized marine ecosystems using the European flat oyster, Ostrea edulis. Aquatic Conservation: Marine and Freshwater Ecosystems 2023:1-16 doi.org/10.1002/aqc.3926
  40. Burke M*, Grant J, Filgueira R, Sheng J (2023) Temporal and spatial variability in hydrography and dissolved oxygen along southwest Nova Scotia using glider observations. Continental Shelf Research 254:104908 doi.org/10.1016/j.csr.2022.104908
  41. Sun X, Filgueira R, Wang N, Guyondet T, Dong J, Zhang X (2023) Assessing shellfish farming-mediated benthic impacts based on organic carbon flux simulation and composition of macrofaunal community. Science of the Total Environment 861:160598 doi.org/10.1016/j.scitotenv.2022.160598
  42. Jiang T, Pan J, Steeves L*, Jiang Z, Filgueira R, Strand Ø, Strohmeier T, Cranford, PJ, Cui Z, Wang W, Xu D (2022) Effect of Mytilus coruscus selective filtration on phytoplankton assemblages. Frontiers in Marine Science 9:1070737 doi.org/10.3389/fmars.2022.1070737 
  43. Rector M*, Filgueira R, Bailey M, Walker TR, Grant J (2022) Aquaculture eco-certification and sustainability outcomes: challenges, shortfalls, and insights from other resource sectors. Reviews in Aquaculture doi.org/10.1111/raq.12763
  44. Hargrave B, Filgueira R, Grant J, Law BA (2022) Combined models of fish growth, waste production, dispersal and deposition in spreadsheet format (XLDEPMOD) for predicting benthic enrichment from Atlantic salmon net-pen aquaculture. Aquaculture Environment Interactions 14:309-328 doi.org/10.3354/aei00445
  45. Steeves L*, Agüera A, Filgueira R, Strand Ø, Strohmeier T (2022) Responses of feeding and ingestion rates in M. edulis to natural diets. Journal of Marine Science and Engineering 10(9):1290 doi.org/10.3390/jmse10091290
  46. Burke M*, Grant J, Filgueira R, Swanson A (2022) Oxygenation effects on temperature and oxygen at a commercial Atlantic salmon farm. Aquacultural Engineering 99:102287 doi.org/10.1016/j.aquaeng.2022.102287
  47. Sickander O*, Filgueira R (2022) Factors affecting IMTA (Integrated Multi-Trophic Aquaculture) Implementation on Atlantic Salmon (Salmo salar) Farms. Aquaculture 561:738716 doi.org/10.1016/j.aquaculture.2022.738716
  48. O'Donncha F, Hu Y, Palmes P, Burke M*, Filgueira R, Grant J (2022) A spatio-temporal LSTM model to forecast across multiple temporal and spatial scales. Ecological Informatics 69:101687 doi.org/10.1016/j.ecoinf.2022.101687
  49. Weitzman J*, Filgueira R, Grant J (2022) Identifying key factors driving public opinion of salmon aquaculture. Marine Policy 143:105175 doi.org/10.1016/j.marpol.2022.105175
  50. Guyondet T, Filgueira R, Pearce CM, Tremblay R, Comeau LA (2022) Nutrient-loading mitigation of shellfish aquaculture in semi-enclosed estuaries. Frontiers in Marine Science 9:909926 doi.org/10.3389/fmars.2022.909926
  51. Steeves L*, Vimond C*, Strohmeier T, Casas S, Strand Ø, Comeau LA, Filgueira R (2022) Relationship between pumping rate and particle capture efficiency in three species of bivalves. Marine Ecology Progress Series 691:55-68 doi.org/10.3354/meps14063
  52. Wood SE*, Filgueira R (2022) Drivers of social acceptability for bivalve aquaculture in Atlantic Canadian communities. Ecology and Society 27(3):9 doi.org/10.5751/ES-13358-270309
  53. Trueman J*, Filgueira R, Fanning L (2022) Transparency and communication in Norwegian and Nova Scotian Atlantic salmon aquaculture industries. Marine Policy 138:104958 doi.org/10.1016/j.marpol.2022.104958
  54. Crossin GT, Filgueira R, Studholme KR, Hipfner JM (2022) Phenological cues to breeding and the differential response of Pacific Auks to variation in marine productivity. Marine Ecology Progress Series 687:163-172  doi.org/10.3354/meps14015
  55. Sun X, Zhang Y, Filgueira R, Dong J, Zhang Z, Zhang, X (2022) Functional and trophic variations in macrofaunal assemblage reflect the ecological effects of bottom-based Manila clam farm. Ecological Indicators 135:108510 doi.org/10.1016/j.ecolind.2021.108510
  56. Kraly P*, Weitzman J*, Filgueira R (2022) Understanding factors influencing social acceptability: insights from media portrayal of salmon aquaculture in Atlantic Canada. Aquaculture 547:737497 doi.org/10.1016/j.aquaculture.2021.737497
  57. Rector M*, Weitzman J*, Filgueira R, Grant J (2022) Indicators of salmon aquaculture impacts: a systematic review. Reviews in Aquaculture 14:156-177 doi.org/10.1111/raq.12590
  58. O’Donncha F, Akhriev A, Eck B, Burke M*, Filgueira R, Grant J (2021) Deployment and Management of Time Series Forecasts in Ocean Industry. 2021 IEEE International Conference on Big Data (Big Data): 4091-4096) doi.org/10.1109/BigData52589.2021.9671877
  59. Rector ME*, Filgueira R, Grant J (2021) Ecosystem services in salmon aquaculture sustainability schemes. Ecosystem Services 52:101379 doi.org/10.1016/j.ecoser.2021.101379
  60. Lavaud R, Filgueira R, Augustine S (2021) The role of dynamic energy budgets in conservation physiology. Conservation Physiology 9(1): coab083 doi:10.1093/conphys/coab083
  61. Lavaud R*, Durier G, Nadalini J-B, Filgueira R, Comeau LA, Babarro JMF, Michaud S, Scarratt M, Tremblay R (2021) Effects of the toxic dinoflagellate Alexandrium catenella on the behaviour and physiology of the blue mussel Mytilus edulis. Harmful Algae. 108:102097 doi.org/10.1016/j.hal.2021.102097
  62. O’Donncha F, Stockwell CL*, Rey Planellas S, Micallef G, Palmes P, Webb C, Filgueira R, Grant J (2021) Data driven insight into fish behaviour and their use for precision aquaculture. Frontiers in Animal Science. 2:695054 doi.org/10.3389/fanim.2021.695054
  63. Stockwell CL*, Filgueira R, Grant J (2021) Determining the effects of environmental events on cultured Atlantic salmon behavior using 3-dimensional acoustic telemetry. Frontiers in Animal Science 2:701813 doi.org/10.3389/fanim.2021.701813
  64. Coffin MR, Clements JC, Comeau LA, Guyondet T, Maillet M, Steeves L*, Winterburn K*, Babarro JMF, Mallet MA, Haché R, Filgueira R (2021) The killer within: Endemic bacteria accelerate oyster mortality during sustained anoxia. Limnology and Oceanography 66(7):2885-2900 doi.org/10.1002/lno.11798
  65. Weitzman J*, Filgueira R, Grant J (2021) Development of best practices for more holistic assessments of carrying capacity of aquaculture. Journal of Environmental Management 287:112278 doi.org/10.1016/j.jenvman.2021.112278
  66. Filgueira R, Guyondet T, Thupaki P, Reid GK, Howarth LM, Grant J (2021) Inferring the potential for nitrogen toxicity on seagrass in the vicinity of an aquaculture site using mathematical models. Journal of Environmental Management 282:111921 doi.org/10.1016/j.jenvman.2020.111921
  67. Filgueira R, Guyondet T, Thupaki P, Sakamaki T, Grant J (2021) The effect of embayment complexity on ecological carrying capacity estimations in bivalve aquaculture sites. Journal of Cleaner Production 288:125739 doi.org/10.1016/j.jclepro.2020.125739
  68. Cantrell D, Vanderstichel R, Filgueira R, Grant J, Revie CW (2021) Validation of a sea lice dispersal model: principles from ecological agent-based models applied to aquatic epidemiology. Aquaculture Environment Interactions 13:65-79 doi.org/10.3354/aei00390
  69. Mikkelsen E, Fanning L, Kreiss C, Billing S-L, Dennis J, Filgueira R, Grant J, Krause G, Lipton D, Miller M, Perez J, Stead S, Villasante S (2021) Availability and usefulness of economic data on the effects of aquaculture: A North Atlantic comparative assessment. Reviews in Aquaculture 13(1), 601-618 doi.org/10.1111/raq.12488
  70. Burke M*, Grant J, Filgueira R, Stone T (2021) Oceanographic processes control dissolved oxygen variability at an Atlantic salmon farm: Application of a real-time sensor network. Aquaculture 533:736143 doi.org/10.1016/j.aquaculture.2020.736143
  71. Kluger LC, Filgueira R (2021) Thinking outside the box: embracing social complexity into aquaculture carrying capacity estimations. ICES Journal of Marine Science 78(1):435-442 Note: both authors contributed equally doi:10.1093/icesjms/fsaa063
  72. Babarro JMF, Filgueira R, Padín XA, Longa Portabales MA (2020) A novel index of the performance of Mytilus galloprovincialis to improve commercial exploitation in aquaculture. Frontiers in Marine Science 7:719 doi.org/10.3389/fmars.2020.00719
  73. Steeves L*, Strohmeier T, Filgueira R, Strand Ø (2020) Exploring feeding physiology of Mytilus edulis across geographic and fjord gradients in low-seston environments. Marine Ecology Progress Series 651:71-84  doi.org/10.3354/meps13455 
  74. Howarth LM*, Filgueira R, Haas S, Berry HB, McKee A, Steeves L*, Grant J (2020) The effects of incubation time, temperature and nitrogen concentration on macroalgae (Chondrus crispus) isotopic composition (δ15N). Journal of Experimental Marine Biology and Ecology 530-531:151431 doi.org/10.1016/j.jembe.2020.151431
  75. Filgueira R, Chica M, Palacios JJ, Strohmeier T, Lavaud R*, Agüera A, Damas S, Strand Ø (2020) Embracing multimodal optimization to enhance Dynamic Energy Budget parameterization. Ecological Modelling 431:109139 doi.org/10.1016/j.ecolmodel.2020.109139
  76. Lavaud R*, Guyondet T, Filgueira R, Tremblay R, Comeau LA (2020) Modelling bivalve culture - eutrophication interactions in shallow coastal ecosystems. Marine Pollution Bulletin 157:111282 doi.org/10.1016/j.marpolbul.2020.111282
  77. Krause G, Billing SL, Dennis J, Grant J, Fanning L, Filgueira R, Miller M, Perez Agúndez JA, Stybel N, Stead SM, Wawrzynski W (2020) Visualizing the Social in Aquaculture: How Social Dimension Components Illustrate the Effects of Aquaculture across Geographic Scales. Marine Policy 118:103985 doi.org/10.1016/j.marpol.2020.103985
  78. Maxwell RJ*, Filgueira R (2020) Key players in the Grieg NL Placentia Bay Atlantic Salmon Aquaculture Project: a social network analysis. Marine Policy 113:103800 doi:10.1016/j.marpol.2019.103800
  79. Lavaud R*, Filgueira R, Nadeau A, Steeves L*, Guyondet T (2020) A Dynamic Energy Budget model for the macroalgae Ulva lactuca. Ecological modelling 418:108922 dio:10.1016/j.ecolmodel.2019.108922
  80. Bradford JI*, Filgueira R, Bailey M (2020) Underwater community gardens?  Exploring community-based marine aquaculture as a coastal resource management strategy in Nova Scotia, Canada. FACETS 5:26-48 doi:10.1139/facets-2019-0010
  81. Cantrell D, Filgueira R, Revie CV, Rees E, Vanderstichel R, Guo M, Foreman MGG, Wan D, Grant J (2020) The relevance of larval biology on spatiotemporal patterns of pathogen connectivity among open-marine salmon farms. Canadian Journal of Fisheries and Aquatic Sciences 77(3):505-519 doi:10.1139/cjfas-2019-0040
  82. Weitzman J*, Filgueira R (2020) The evolution and application of carrying capacity in aquaculture: towards a research agenda. Reviews in Aquaculture 12:1297-2322 https://doi.org/10.1111/raq.12383
  83. Reid GK, Lefebvre S, Filgueira R, Robinson SMC, Broch OJ, Dumas A, Chopin T (2020) Performance Measures and Models for Open-water Integrated Multi-Trophic Aquaculture. Reviews in Aquaculture 12:47-75 doi: 10.1111/raq.12304 
  84. Howarth LM*, Filgueira R, Jiang D*, Koepke H, Frame MK, Buchwald C, Finnis S, Chopin T, Costanzo SD, Grant J (2019) Using macroalgal bioindicators to map nutrient plumes from fish farms and other sources at a bay-wide scale. Aquaculture Environment Interactions 11:671-684 doi:10.3354/aei00340
  85. Filgueira R, Strople LC*, Strohmeier T, Rastrick S, Strand Ø (2019) Mussels or tunicates: that is the question. Evaluating efficient and sustainable resource use by low-trophic species in aquaculture settings. Journal of Cleaner Production 231:132-143 doi:10.1016/j.jclepro.2019.05.173
  86. Steeves L*, Filgueira R (2019) Stakeholder perceptions of climate change in the context of bivalve aquaculture. Marine Policy 103:121-129 doi:10.1016/j.marpol.2019.02.024
  87. Kluger LC, Filgueira R, Byron C (2019) Using media analysis to scope priorities in social carrying capacity assessments: a global perspective. Marine Policy 99:252-261 doi:10.1016/j.marpol.2018.10.042
  88. Babarro JMF, Padín XA, Filgueira R, El Morabet H, Longa Portabales MA (2018) The impact of the sea anemone Actinothoe sphyrodeta on mussel cultivation (Galicia, NW Spain). Biofouling 34(10):1138-1149 doi:10.1080/08927014.2018.1547818
  89. Cantrell DL, Rees EE, Vanderstichel R, Grant J, Filgueira R, Revie CW (2018) Using kernel density estimation in a coupled biological-physical model of sea lice dispersal to quantify connectivity among salmon farms. Frontiers in Veterinary Science 5:269 doi:10.3389/fvets.2018.00269
  90. Strople LC*, Filgueira R, Hatcher BG, Denny S, Bordeleau X, Whoriskey FG, Crossin GT (2018) Modelling the effect of environmental conditions on the migration of Atlantic salmon (Salmo salar) smolts through an inland sea. Environmental Biology of Fishes 101:1467-1482 doi:10.1007/s10641-018-0792-5
  91. Casas S, Filgueira R, Lavaud R, Comeau LA, La Peyre MK, La Peyre J (2018) Combined effects of temperature and salinity on the physiology of two geographically-distant eastern oyster populations. Journal of Experimental Marine Biology and Ecology 506:82-90 doi:10.1016/j.jembe.2018.06.001
  92. Steeves LE*, Filgueira R, Guyondet T, Chassé J, Comeau L (2018) Past, present and future: Performance of two bivalve species under changing environmental conditions. Frontiers in Marine Science 5:184 doi:10.3389/fmars.2018.00184
  93. Casas S, Lavaud R, La Peyre MK, Comeau LA, Filgueira R, La Peyre J (2018) Quantifying salinity and season relationships on eastern oyster clearance and oxygen consumption rates. Marine Biology 165:90 doi:10.1007/s00227-018-3351-x
  94. Filgueira R, Grant J, Petersen JK (2018) Identifying the optimal depth for mussel suspended culture in shallow and turbid environments. Journal of Sea Research 132:15-23 doi:10.1016/j.seares.2017.11.006
  95. Kluger L, Filgueira R, Wolff M (2017) Integrating the concept of resilience into the ecosystem-based approach for bivalve aquaculture management. Ecosystems 20:1364-1382 doi: 10.1007/s10021-017-0118-z 
  96. Filgueira R, Guyondet T, Reid GK, Grant J, Cranford PJ (2017) Vertical particle fluxes dominate Integrated Multi-Trophic Aquaculture (IMTA) sites: implications for shellfish-finfish synergy. Aquaculture Environment Interactions 9:127-143 doi:10.3354/aei00218
  97. Filgueira R, Guyondet T, Comeau LA, Tremblay R (2016) Bivalve aquaculture environment interactions in the context of climate change. Global Change Biology 22:3901-3913 doi:10.1111/gcb.13346
  98. Cranford PJ, Strohmeier T, Filgueira R, Strand Ø (2016) Potential methodological influences on the determination of particle retention efficiency by suspension feeders: Mytilus edulis and Ciona intestinalis. Aquatic Biology 25:61-73. doi: 10.3354/ab00660
  99. Grant J, Filgueira R, Barrell J (2016) Lack of interaction between finfish aquaculture and lobster catch in coastal Nova Scotia. Marine Pollution Bulletin 110:613-615. doi:10.1016/j.marpolbul.2016.06.043
  100. Sonier R, Filgueira R, Guyondet T, Tremblay R, Olivier F, Meziane T, Starr M, LeBlanc AR, Comeau LA (2016) Picophytoplankton contribution to Mytilus edulis growth in an intensive culture environment. Marine Biology 163:73. doi:10.1007/s00227-016-2845-7
  101. Bacher C, Filgueira R, Guyondet T (2016) Probabilistic approach of water residence time and connectivity using Markov Chains with application to tidal embayments. Journal of Marine Systems 153:25-41. doi:10.1016/j.jmarsys.2015.09.002
  102. Filgueira R, Chapman JM, Suski CD, Cooke SJ (2016) The influence of land-use patterns on stream diversity and size-at-age of a generalist fish. Ecological Indicators 60:248-257. doi:10.1016/j.ecolind.2015.06.006
  103. Filgueira R, Guyondet T, Bacher C, Comeau LA (2015) Informing Marine Spatial Planning (MSP) with numerical modelling: a case-study on shellfish aquaculture in Malpeque Bay (Eastern Canada). Marine Pollution Bulletin 100:200-216. doi:10.1016/j.marpolbul.2015.08.048
  104. Comeau LA, Filgueira R, Guyondet T, Sonier R (2015). The impact of invasive tunicates on the demand for phytoplankton in longline mussel farms. Aquaculture 441:95-105. doi:10.1016/j.aquaculture.2015.02.018
  105. Filgueira R, Brown MS, Comeau LA, Grant J (2015) Ocean temperature controls mussels larval phenology. Journal of Molluscan Studies 81(2):269-273. doi:10.1093/mollus/eyu093
  106. Filgueira R, Byron CJ, Comeau LA, Costa-Pierce B, Cranford PJ, Ferreira JG, Grant J, Guyondet T, Jansen HM, Landry T, McKindsey CW, Petersen JK, Reid GK, Robinson SMC, Smaal A, Sonier R, Strand Ø, Strohmeier T (2015) An integrated ecosystem approach for assessing the potential role of bivalve shells as part of the carbon trading system. Marine Ecology Progress Series 518:281-287. doi:10.3354/meps11048
  107. Guyondet T, Comeau LA, Bacher C, Grant J, Rosland R, Sonier R, Filgueira R (2015) Climate change increases carrying capacity in a coastal embayment dedicated to shellfish aquaculture. Estuaries and Coasts 38(5):1593-1618. doi:10.1007/s12237-014-9899-x
  108. Filgueira R, Grant J, Strand Ø (2014) Implementation of marine spatial planning in shellfish aquaculture management: modelling studies in a Norwegian fjord. Ecological Applications 24(4):832-843. doi:10.1890/13-0479.1
  109. Filgueira R, Guyondet T, Comeau LA, Grant J (2014) A fully-spatial ecosystem-DEB model of oyster (Crassostrea virginica) carrying capacity in the Richibucto Estuary, Eastern Canada. Journal of Marine Systems 136:42-54. doi:10.1016/j.jmarsys.2014.03.015
  110. Larsen PS, Filgueira R, Riisgård HU (2014) Somatic growth of mussels Mytilus edulis in field studies compared to predictions using BEG, DEB, and SFG models. Journal of Sea Research 88:100-108. doi:10.1016/j.seares.2014.01.006
  111. Filgueira R, Guyondet T, Comeau LA, Grant J (2014) Physiological indices as indicators of ecosystem status in shellfish aquaculture sites. Ecological Indicators 39:134-143. doi:10.1016/j.ecolind.2013.12.006
  112. Filgueira R, Guyondet T, Comeau LA, Grant J (2013) Storm induced changes in coastal geomorphology control estuarine secondary productivity. Earth’s Future 2:1-6. doi:10.1002/2013EF000145.
  113. Filgueira R, Grant J, Stuart R, Brown MS (2013) Ecosystem modelling for ecosystem-based management of bivalve aquaculture sites in data-poor environments. Aquaculture Environment Interactions 4(2):117-133. doi:10.3354/aei00078
  114. Filgueira R, Comeau LA, Landry T, Grant J, Guyondet T, Mallet A (2013) Bivalve condition index as an indicator of aquaculture intensity: a meta-analysis. Ecological Indicators 25:215-229. doi:10.1016/j.ecolind.2012.10.001
  115. Filgueira R, Grant J, Bacher C, Carreau M (2012) A physical-biogeochemical coupling scheme for modeling marine coastal ecosystems. Ecological Informatics 7:71-80. doi:10.1016/j.ecoinf.2011.11.007
  116. Peteiro LG, Labarta U, Fernández-Reiriz MJ, Álvarez-Salgado XA, Filgueira R, Piedracoba S (2011) Population dynamics adaptations to intermittent coastal upwelling systems inferred from Mytilus galloprovincialis settlement patterns. Marine Ecology Progress Series 443:111-127.  doi:10.3354/meps09433
  117. Filgueira R, Rosland R, Grant J (2011) A comparison of Scope For Growth (SFG) and Dynamic Energy Budget (DEB) models applied to the blue mussel (Mytilus edulis). Journal of Sea Research 66:403-410. doi:10.1016/j.seares.2011.04.006
  118. Filgueira R, Castro BG (2011) Study of the trophic web of San Simón Bay (Ría de Vigo) by using stable isotopes. Continental Shelf Research 31:476-487. doi:10.1016/j.csr.2010.10.010
  119. Filgueira R, Grant J, Strand Ø, Asplin L, Aure J (2010) A simulation model of carrying capacity for mussel aquaculture in a Norwegian Fjord: role of artificial-induced upwelling. Aquaculture 308:20-27. doi:10.1016/j.aquaculture.2010.08.005
  120. Duarte P, Fernández-Reiriz MJ, Filgueira R, Labarta U (2010) Modelling mussel growth in ecosystems with low suspended matter loads. Journal of Sea Research 64:273-286. doi:10.1016/j.seares.2010.03.006
  121. Saunders M, Metaxas A, Filgueira R (2010) Implications of warming temperature for population outbreaks of a nonindigenous species in rocky subtidal ecosystems. Limnology and Oceanography 55(4):1627-1642. doi:10.4319/lo.2010.55.4.1627
  122. Filgueira R, Fernández-Reiriz MJ, Labarta U (2010) Clearance rate response of the mussel Mytilus galloprovincialis. II. Response to uncorrelated seston variables (quantity, quality and chlorophyll content). Ciencias Marinas 36(1):15-28. doi:10.7773/cm.v36i1.1646
  123. Peteiro LG, Filgueira R, Labarta U, Fernández-Reiriz MJ (2010) The role of fish predation in recruitment of Mytilus galloprovincialis on different artificial settlement substrates. Aquacultural Engineering 42:25-30. doi:10.1016/j.aquaeng.2009.09.003
  124. Filgueira R, Grant J (2009) A box model for ecosystem-level management of mussel culture carrying capacity in a coastal bay. Ecosystems 12:1222-1233. doi:10.1007/s10021-009-9289-6
  125. Filgueira R, Fernández-Reiriz MJ, Labarta U (2009) Clearance rate response of the mussel Mytilus galloprovincialis. I. Response to extreme chlorophyll ranges. Ciencias Marinas 35(4):405-417. doi:10.7773/cm.v35i4.1645
  126. Filgueira R, Peteiro LG, Labarta U, Fernández-Reiriz MJ (2008) The self-thinning rule applied to cultured populations in aggregate growth matrices. Journal of Molluscan Studies 74:415-418. doi:10.1093/mollus/eyn027
  127. Filgueira R, Labarta U, Fernández-Reiriz MJ (2008) Effect of Condition Index on allometric relationships of clearance rate in Mytilus galloprovincialis Lamarck, 1819. Revista de Biología Marina y Oceanografía 43(2):391-398. doi:10.4067/S0718-19572008000200015
  128. Álvarez-Salgado XA, Labarta U, Fernández-Reiriz MJ, Figueiras FG, Rosón G, Piedracoba S, Filgueira R, Cabanas JM (2008) Renewal time and the impact of harmful algal blooms on the extensive mussel raft culture of the Iberian coastal upwelling system (SW Europe). Harmful Algae 7:849-855. doi:10.1016/j.hal.2008.04.007
  129. Peteiro LG, Filgueira R, Labarta U, Fernández-Reiriz MJ (2008) Growth and biochemical responses of the offspring of mussels directly affected by the “Prestige” oil spill. ICES Journal of Marine Science 65(4):509-513. doi:10.1093/icesjms/fsn014
  130. Filgueira R, Peteiro LG, Labarta U, Fernández-Reiriz MJ (2007) Assessment of spat collector ropes in Galician mussel farming. Aquacultural Engineering 37(3):195-201. doi:10.1016/j.aquaeng.2007.06.001
  131. Peteiro LG, Filgueira R, Labarta U, Fernández-Reiriz MJ (2007) Effect of submerged time of collector ropes on the settlement capacity of Mytilus galloprovincialis L. Aquaculture Research 38:1679-1681. doi:10.1111/j.1365-2109.2007.01820.x
  132. Peteiro LG, Filgueira R, Labarta U, Fernández-Reiriz MJ (2007) Settlement and recruitment patterns of Mytilus galloprovincialis L. in the Ría de Ares-Betanzos (NW Spain) in the years 2004/2005. Aquaculture Research 38:957-964. doi:10.1111/j.1365-2109.2007.01757.x
  133. Filgueira R, Labarta U, Fernández-Reiriz MJ (2006) Flow-through chamber method for clearance rate measurements in bivalves: design and validation of individual chambers and mesocosm. Limnology and Oceanography: Methods 4:284-292. doi:10.4319/lom.2006.4.284

Book chapters and government reports
  1. Falconer L, Alexander K, Bjelland H, Cao L, Filgueira R, Osmundsen T, Papandroulakis N, Sanchez-Jerez P, Soto D (2025). Medium and Large-scale Aquaculture. The Third World Ocean Assessment (WOA III). United Nations.
  2. ICES (2024) Workshop on the Bay of Biscay and Iberian coast ecoregion Aquaculture Overview (WKBoBICAO). ICES Scientific Reports. 6:31. 120pp https://doi.org/10.17895/ices.pub.25942471
  3. Finnis S, Guyondet T, McKindsey CW, Arseneau J, Barrell J, Duhaime J, Filgueira R, Gallardi D, Gaspard D, Gibb O, Goodwin C, Hua K, Macdonald T, Milne R, Lacoursière-Roussel A (2023) Guidance on sampling effort to monitor mesozooplankton communities at Canadian bivalve aquaculture sites using an optical imaging system. Can. Tech. Rep. Fish. Aquat. Sci. 3581 vii + 98 p.
  4. Blackwood C*, Steeves L*, Davidson J, Poirier LA, Comeau LA, Pousse E, Filgueira R (2023) A comparison of the physiology of geographically distinct blue mussels (Mytilus edulis) in Prince Edward Island. Can. Tech. Rep. Fish. Aquat. Sci. 3551: v + 24 p. 
  5. ICES. 2023. Working Group on Social and Economic Dimensions of Aquaculture (WGSEDA). ICES Scientific Reports. 5:60. 11 pp. https://doi.org/10.17895/ices.pub.23455820
  6. Brownscombe JW, Lawrence MJ, Deslauriers D, Filgueira R, Boyd RJ, Cooke SJ (2022) Applied fish bioenergetics. In Cooke SJ, Fangue NA,  Farrell AP,  Brauner CJ,  Eliason EJ (Eds.) Conservation Physiology for the Anthropocene – A Systems Approach. Fish Physiology Series Vol 39A. Academic Press, Cambridge, MA. Pp 141-188. doi.org/10.1016/bs.fp.2022.04.004
  7. Pavone R*, Steeves L*, Filgueira R, Sonier R, Niles M (2022) Sea Scallop (Placopecten magellanicus) respiration and mortality rates in response to summer air exposure. Can. Tech. Rep. Fish. Aquat. Sci. 3476: vii + 27 p. 
  8. Sutherland TF, Guyondet T, Filgueira R, Krassovski MV, Foreman MGG (2022) Monitoring methods to support area-based bivalve aquaculture management in the Pacific region. DFO Can. Sci. Advis. Sec. Res. Doc. 2022/004. vi + 55 p. 
  9. Guyondet T, Krassovski MV, Sutherland TF, Foreman MGG, Filgueira R (2022) An ecological carrying capacity assessment for shellfish aquaculture in Baynes Sound, British Columbia. DFO Can. Sci. Advis. Sec. Res. Doc. 2022/003. xi + 119 p. 
  10. ICES. 2020. Working Group on Social and Economic Dimensions of Aquaculture (WGSEDA). ICES Scientific Reports. 2:78. 11 pp. http://doi.org/10.17895/ices.pub.7500
  11. Filgueira R, Strohmeier T, Strand Ø (2019) Regulating services of bivalve molluscs in the context of the carbon cycle and implications for ecosystem valuation. In Smaal et al (Ed.) Goods and Services of Marine Bivalves. Elsevier, pp 231-251
  12. Weitzman J*, Steeves L*, Bradford JI*, Filgueira R (2019) Near- and far-field effects of marine aquaculture. In Sheppard, C (Ed.) World Seas: An Environmental Evaluation, Vol III: Ecological Issues and Environmental Impacts, 2e. Elsevier, pp 197-220
  13. Sonier R, Filgueira R, Daoud D, Comeau LA (2018) Feeding pressure of Mytilus edulis and Styela clava on phytoplankton and zooplankton, including lobster larvae (stages I and IV). Can. Tech. Rep. Fish. Aquat. Sci. 3263: viii + 23 p.
  14. Comeau LA, Filgueira R, Davidson JDP, Nadeau A, Sonier R, Guyondet T, Ramsay A, Davidson J (2017) Population structure and grazing capacity of cultivated mussels in Prince Edward Island, Canada. Can. Tech. Rep. Fish. Aquat. Sci. 3228: viii + 23 p. 
  15. Filgueira R, Guyondet T, Comeau LA, Sutherland TF (2016) Dynamic Energy Budget (DEB) models of bivalve molluscs inhabiting British Columbia coastal waters: review of existing data and further directions for data collection. Can. Tech. Rep. Fish. Aquat. Sci. 3173: vii + 28 p.
  16. Filgueira R, Comeau LA, Guyondet T, McKindsey CW, Byron CJ (2015) Modelling carrying capacity of bivalve aquaculture: a review of definitions and methods. In: Meyers R (Ed.) Encyclopedia of Sustainability Science and Technology. Springer, New York. DOI 10.1007/978-1-4939-2493-6_945-1
  17. Filgueira R, Guyondet T, Comeau LA (2015) Modelling Carrying Capacity of bivalve aquaculture: a review of definitions and methods. DFO Can. Sci. Advis. Sec. Res. Doc. 2015/001
  18. Filgueira R, Guyondet T, Bacher C, Comeau LA (2015) Carrying Capacity for Mussel Aquaculture in Malpeque Bay, Prince Edward Island. DFO Can. Sci. Advis. Sec. Res. Doc. 2015/002
  19. DFO (2015). Carrying capacity for shellfish aquaculture with reference to mussel aquaculture in Malpeque Bay, Prince Edward Island. DFO Can. Sci. Advis. Sec. Sci. Advis. Rep. 2015/003
  20. Filgueira R, Guyondet T, Comeau LA (2014) Preliminary carrying capacity analysis of current and future aquaculture scenarios in Malpeque Bay (P.E.I.). Can. Tech. Rep. Fish. Aquat. Sci. 3081: vii + 28 p.
  21. Grant J, Filgueira R (2011) The application of dynamic modelling to prediction of production carrying capacity in shellfish farming. In: Shumway S (Ed.) Shellfish aquaculture and the environment. Wiley-Blackwell Science Publishers. Ames, Iowa. pp 135-154. (ISBN: 978-0-8138-1413-1)
  22. Cranford PJ, Balch T, Buchan C, Crocker J, Filgueira R, Grant J, Hargrave B, Law B, Li W, Lu L, Sephton D, Roach S, Stuart R (2011) Mussel Aquaculture regulatory effectiveness monitoring: Validation of the St. Ann’s Harbour environmental assessment and monitoring program. Can. Tech. Rep. Fish. Aquat. Sci. 2905: vi + 25 p.
  23. Álvarez–Salgado XA, Fernández–Reiriz MJ, Labarta U, Filgueira R, Peteiro LG, Figueiras FG, Piedracoba S, Rosón G (2009) Influencia do cambio climático no cultivo do mexillón das rías galegas. In: Pérez V, Fernández M, Gómez JL (Ed.) Evidencias e Impactos do Cambio Climático en Galicia. Xunta de Galicia. Consellería de Medioambiente de Desenvolvemento Sostible, pp 373-389. (ISBN: 978-84-453-4782-9)